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Chapter 28
Chemistry of the Living State

 
 
 
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p 1135-3
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This animation illustrates some properties of proteins amino acids.
Notes
Proteins and amino acids. The primary structure of a protein is its sequence of amino acids. The secondary structure of a protein is stabilized by hydrogen bonds between the carboxyl oxygens and the amide hydrogens of peptide groups. Free amino acids exist in their ionized forms in neutral solution. All amino acids except glycine have 4 different groups around the alpha carbon making them optically active. Only L amino acids are found in proteins.
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p 1135-3
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The concept of chirality is illustrated in this animation.
Notes
A chiral object is not superimposable on its mirror image. A carbon atom with four different groups is chiral so it cannot be superimposed on its mirror image. Two chiral isomers are called enantiomers and are designated as either the R or the S isomer. Enantiomers have similar physical properties but behave differently in chiral environments. Many molecules have more than one chiral carbon atom.
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movie
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The various types of isomerism are demonstrated in this animation.
Notes
Isomers are compounds that have the same chemical formula but different structural formulas. Configurational (structural) isomers differ in the locations of bonds or groups in the molecule. Stereoisomers have the same groups of atoms bonded to each other but differ in the spatial arrangements of the atoms. Geometrical (cis-trans) isomers and optical isomers are stereoisomers.
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Title
movie
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Animation showing the design and operation of a polarimeter.
Notes
Nonpolarized light has its electric vectors vibrating in all planes. A polarizer allows only light vibrating in a single plane to pass through it. An analyzer is used to determine if the polarized light has been rotated. An achiral solution has no effect on the plane of polarization of the light. A solution containing an excess of one enantiomer of a chiral substance causes rotation of the plane of polarization of the light.
28.1
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28-1
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Notes
Elements in living matter
28.2
Title
28-2
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Notes
cellular organization
28.3
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28-3
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Notes
optical isomeers of glyceraldehyde
28.4
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28-4
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Notes
view through the analyzer prism of a polarimeter
28.5
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28-5
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Notes
The structure of D-(-)-erythrose
28.6
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28-6
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Notes
Representation of ring closure in glucose molecule
28.7
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28-7
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Notes
alpha and beta forms of D glucose
28.8
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28-8
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Notes
some common disaccharides
28.9
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28-9
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Notes
Two common polysaccharides
28.2
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28-2
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Notes
Experimental determination of amino acid sequence
28.11
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28-11
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Notes
Amino acid sequence in beef insulin
28.12
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28-12
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Notes
Secondary structure of a protein-an helix
28.13
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28-13
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Notes
Pleated-sheet model of beta-keratin
28.14
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28-14
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Notes
Linkages contributing to the tertiary sturcture of proteins
28.15
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28-15
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Notes
Representation of the tertiary structure of myglobin
28.16
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28-16
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Notes
The four levels of protein structure
28.17
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28-17
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Notes
metabolism outline
28.18
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28-18
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Notes
Converstion of ADP to ATP
28.19
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28-19
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Notes
Sucrase binding a scrose molecule
28.20
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28-20
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Notes
Change in enzyme conformation after binding of substrate
28.21
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28-21
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Notes
Completion of the enzyme-catzlyzed reaction
28.22
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28-22
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Notes
structure of carboxypeptidase
28.23
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28-23
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Notes
Binding of protein to the active site of carboxypeptidase
28.24
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28-24
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Notes
Constituents of nucleic acids
28.25
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28-25
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Notes
A protion of a nucleic acid chain
28.26
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28-26
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Notes
DNA model
28.27
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28-27
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Notes
Replciation of a DNA molecule
28.28
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28-28
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Notes
Protein synthesis
p 1124-1
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p 1124-1
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Notes
Glyerol and fatty acid
p 1124-1a
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p 1124-1a
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Notes
Glycerol tripalmitate, glycerol tiroleate and glycerol lauropalmitostearate
p 1125-1
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p 1125-1
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Notes
Tristerarin, glycerol and potassium stearate
p 1125-1a
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p 1125-1a
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Notes
3-hydrocy-2-butanone and diacetly
p 1126-1
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p 1126-1
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Notes
olestra and triglyceride
p 1126-1a
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p 1126-1a
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corn oil photo
p 1127-1
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p 1127-1
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Notes
phosphatidylethanolamine and phosphatidylcholine
p 1127-1a
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p 1127-1a
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Notes
a cell membrane
p 1127-1b
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p 1127-1b
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Notes
glocose and fructose
p 1129-1
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p 1129-1
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Notes
Ficher projections
p 1130-1
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p 1130-1
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Notes
S and R L and D glyceraldehyde
p 1130-1a
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p 1130-1a
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Notes
D and L Erythrose and threose
p 1130-1b
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p 1130-1b
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D erythrose and Threose
p 1130-1c
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p 1130-1c
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photo of Emil Fischer
p 1133-1
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p 1133-1
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cellobiose
p 1135-1a
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p 1135-1a
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an L-amino acid
p 1136-1
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p 1136-1
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Notes
Acid to basic solution
p 1137-1
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p 1137-1
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Notes
peptide bond formation
p 1137-1a
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p 1137-1a
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Notes
naming a polypeptide
p 1142-1
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p 1142-1
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missing no name
p 1144-1
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1144-1
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Notes
The structure of glyceralde-hyde-3-phosphate
p 1144-1a
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p 1144-1a
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Notes
ADP/ATP conversion
p 1145-1
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p 1145-1
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Notes
Hydrolysis of sucrose
p 1147-1
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p 1147-1
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Notes
peptide linkage being broken
p 1152-1
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p 1152-1
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Notes
the genetic code
p 1154-1a
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p 1154-1a
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Notes
Structure of L-threonine
p 1154-1b
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p 1154-1b
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Notes
problem 1
p 1154-1b
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p 1154-1b
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problem 2
p 1155-1a
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p 1155-1a
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problem 4
p 1155-1b
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p 1155-1b
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problem 5
p 1156-1
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p 1156-1
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problem 23
P 1157-1a
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P 1157-1a
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problem 31
P 1157-1b
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P 1157-1b
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problem 32
P 1157-1c
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P 1157-1c
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problem 33
P 1157-1d
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P 1157-1d
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problem 34
p 1159-1
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p 1159-1
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problem 60
p 1160-1
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p 1160-1
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problem 71
Table 28.1
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Table 28.1
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Notes
Some common fatty acids
Table 28.2
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Table 28.2
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Notes
some common fats and oils
Table 28.3
Title
Table 28.3
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Notes
Some common amino acids